WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T05A10.1f.1 Sequence Name  T05A10.1f.1
Length (nt)  6471   Chromosome Location  X: 10773091-10782386
Chromosome . Primary Identifier  X Chromosome Location . Start  10773091
Chromosome Location . End  10782386 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T05A10.1f.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004862 sma-9 T05A10.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T05A10.1f T05A10.1f 6471   X: 10773091-10773654

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:T05A10.1f.1 10773091 10782386 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

25 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon250022   564   X: 10773091-10773654 Caenorhabditis elegans
Exon250038   156   X: 10773707-10773862 Caenorhabditis elegans
Exon250052   538   X: 10773931-10774468 Caenorhabditis elegans
Exon250065   452   X: 10774893-10775344 Caenorhabditis elegans
Exon250078   76   X: 10775530-10775605 Caenorhabditis elegans
Exon250091   410   X: 10775830-10776239 Caenorhabditis elegans
Exon250105   138   X: 10776288-10776425 Caenorhabditis elegans
Exon250120   219   X: 10776573-10776791 Caenorhabditis elegans
Exon250134   1523   X: 10776840-10778362 Caenorhabditis elegans
Exon250149   105   X: 10778436-10778540 Caenorhabditis elegans
Exon250164   121   X: 10778743-10778863 Caenorhabditis elegans
Exon250179   98   X: 10778910-10779007 Caenorhabditis elegans
Exon250194   116   X: 10779061-10779176 Caenorhabditis elegans
Exon250209   109   X: 10779262-10779370 Caenorhabditis elegans
Exon250224   221   X: 10779422-10779642 Caenorhabditis elegans
Exon250239   158   X: 10779689-10779846 Caenorhabditis elegans
Exon250254   276   X: 10779896-10780171 Caenorhabditis elegans
Exon250269   149   X: 10780228-10780376 Caenorhabditis elegans
Exon250284   143   X: 10780465-10780607 Caenorhabditis elegans
Exon250295   206   X: 10780896-10781101 Caenorhabditis elegans
Exon250322   101   X: 10781498-10781598 Caenorhabditis elegans
Exon250334   244   X: 10781646-10781889 Caenorhabditis elegans
Exon250346   142   X: 10781940-10782081 Caenorhabditis elegans
Exon250359   137   X: 10782133-10782269 Caenorhabditis elegans
Exon250369   69   X: 10782318-10782386 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:T05A10.1f.1 10773091 10782386 1

1 Sequence

Length
6471

1 Sequence Ontology Term

Identifier Name Description
transcript