WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T05A10.1j.4 Sequence Name  T05A10.1j.4
Length (nt)  6892   Chromosome Location  X: 10773091-10782921
Chromosome . Primary Identifier  X Chromosome Location . Start  10773091
Chromosome Location . End  10782921 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T05A10.1j.4

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004862 sma-9 T05A10.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T05A10.1j T05A10.1j 4530   X: 10773091-10773654

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:T05A10.1j.4 10773091 10782921 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

26 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon249996   564   X: 10773091-10773654 Caenorhabditis elegans
Exon250017   156   X: 10773707-10773862 Caenorhabditis elegans
Exon250031   538   X: 10773931-10774468 Caenorhabditis elegans
Exon250045   128   X: 10775217-10775344 Caenorhabditis elegans
Exon250057   76   X: 10775530-10775605 Caenorhabditis elegans
Exon250071   410   X: 10775830-10776239 Caenorhabditis elegans
Exon250085   138   X: 10776288-10776425 Caenorhabditis elegans
Exon250100   219   X: 10776573-10776791 Caenorhabditis elegans
Exon250114   1523   X: 10776840-10778362 Caenorhabditis elegans
Exon250130   105   X: 10778436-10778540 Caenorhabditis elegans
Exon250145   121   X: 10778743-10778863 Caenorhabditis elegans
Exon250160   98   X: 10778910-10779007 Caenorhabditis elegans
Exon250175   116   X: 10779061-10779176 Caenorhabditis elegans
Exon250190   109   X: 10779262-10779370 Caenorhabditis elegans
Exon250206   223   X: 10779422-10779644 Caenorhabditis elegans
Exon250220   158   X: 10779689-10779846 Caenorhabditis elegans
Exon250235   276   X: 10779896-10780171 Caenorhabditis elegans
Exon250250   149   X: 10780228-10780376 Caenorhabditis elegans
Exon250265   143   X: 10780465-10780607 Caenorhabditis elegans
Exon250275   206   X: 10780896-10781101 Caenorhabditis elegans
Exon250284   208   X: 10781152-10781359 Caenorhabditis elegans
Exon250299   101   X: 10781498-10781598 Caenorhabditis elegans
Exon250312   244   X: 10781646-10781889 Caenorhabditis elegans
Exon250325   142   X: 10781940-10782081 Caenorhabditis elegans
Exon250338   137   X: 10782133-10782269 Caenorhabditis elegans
Exon250344   604   X: 10782318-10782921 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:T05A10.1j.4 10773091 10782921 1

1 Sequence

Length
6892

1 Sequence Ontology Term

Identifier Name Description
transcript