WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T05A10.1j.3 Sequence Name  T05A10.1j.3
Length (nt)  6690   Chromosome Location  X: 10773091-10782927
Chromosome . Primary Identifier  X Chromosome Location . Start  10773091
Chromosome Location . End  10782927 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T05A10.1j.3

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004862 sma-9 T05A10.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T05A10.1j T05A10.1j 4530   X: 10773091-10773654

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:T05A10.1j.3 10773091 10782927 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

25 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon249997   564   X: 10773091-10773654 Caenorhabditis elegans
Exon250016   156   X: 10773707-10773862 Caenorhabditis elegans
Exon250030   538   X: 10773931-10774468 Caenorhabditis elegans
Exon250044   128   X: 10775217-10775344 Caenorhabditis elegans
Exon250056   76   X: 10775530-10775605 Caenorhabditis elegans
Exon250070   410   X: 10775830-10776239 Caenorhabditis elegans
Exon250084   138   X: 10776288-10776425 Caenorhabditis elegans
Exon250099   219   X: 10776573-10776791 Caenorhabditis elegans
Exon250113   1523   X: 10776840-10778362 Caenorhabditis elegans
Exon250129   105   X: 10778436-10778540 Caenorhabditis elegans
Exon250144   121   X: 10778743-10778863 Caenorhabditis elegans
Exon250159   98   X: 10778910-10779007 Caenorhabditis elegans
Exon250174   116   X: 10779061-10779176 Caenorhabditis elegans
Exon250189   109   X: 10779262-10779370 Caenorhabditis elegans
Exon250205   223   X: 10779422-10779644 Caenorhabditis elegans
Exon250219   158   X: 10779689-10779846 Caenorhabditis elegans
Exon250234   276   X: 10779896-10780171 Caenorhabditis elegans
Exon250249   149   X: 10780228-10780376 Caenorhabditis elegans
Exon250264   143   X: 10780465-10780607 Caenorhabditis elegans
Exon250274   206   X: 10780896-10781101 Caenorhabditis elegans
Exon250298   101   X: 10781498-10781598 Caenorhabditis elegans
Exon250311   244   X: 10781646-10781889 Caenorhabditis elegans
Exon250324   142   X: 10781940-10782081 Caenorhabditis elegans
Exon250337   137   X: 10782133-10782269 Caenorhabditis elegans
Exon250345   610   X: 10782318-10782927 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:T05A10.1j.3 10773091 10782927 1

1 Sequence

Length
6690

1 Sequence Ontology Term

Identifier Name Description
transcript