WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T05A10.1j.2 Sequence Name  T05A10.1j.2
Length (nt)  6896   Chromosome Location  X: 10773091-10782928
Chromosome . Primary Identifier  X Chromosome Location . Start  10773091
Chromosome Location . End  10782928 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T05A10.1j.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004862 sma-9 T05A10.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T05A10.1j T05A10.1j 4530   X: 10773091-10773654

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:T05A10.1j.2 10773091 10782928 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

26 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon249998   564   X: 10773091-10773654 Caenorhabditis elegans
Exon250015   156   X: 10773707-10773862 Caenorhabditis elegans
Exon250029   538   X: 10773931-10774468 Caenorhabditis elegans
Exon250043   128   X: 10775217-10775344 Caenorhabditis elegans
Exon250055   76   X: 10775530-10775605 Caenorhabditis elegans
Exon250069   410   X: 10775830-10776239 Caenorhabditis elegans
Exon250083   138   X: 10776288-10776425 Caenorhabditis elegans
Exon250098   219   X: 10776573-10776791 Caenorhabditis elegans
Exon250112   1523   X: 10776840-10778362 Caenorhabditis elegans
Exon250128   105   X: 10778436-10778540 Caenorhabditis elegans
Exon250143   121   X: 10778743-10778863 Caenorhabditis elegans
Exon250158   98   X: 10778910-10779007 Caenorhabditis elegans
Exon250173   116   X: 10779061-10779176 Caenorhabditis elegans
Exon250188   109   X: 10779262-10779370 Caenorhabditis elegans
Exon250204   223   X: 10779422-10779644 Caenorhabditis elegans
Exon250218   158   X: 10779689-10779846 Caenorhabditis elegans
Exon250233   276   X: 10779896-10780171 Caenorhabditis elegans
Exon250248   149   X: 10780228-10780376 Caenorhabditis elegans
Exon250263   143   X: 10780465-10780607 Caenorhabditis elegans
Exon250273   206   X: 10780896-10781101 Caenorhabditis elegans
Exon250287   205   X: 10781155-10781359 Caenorhabditis elegans
Exon250297   101   X: 10781498-10781598 Caenorhabditis elegans
Exon250310   244   X: 10781646-10781889 Caenorhabditis elegans
Exon250323   142   X: 10781940-10782081 Caenorhabditis elegans
Exon250336   137   X: 10782133-10782269 Caenorhabditis elegans
Exon250346   611   X: 10782318-10782928 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:T05A10.1j.2 10773091 10782928 1

1 Sequence

Length
6896

1 Sequence Ontology Term

Identifier Name Description
transcript