WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T05A10.1j.4 Sequence Name  T05A10.1j.4
Length (nt)  6892   Chromosome Location  X: 10773091-10782921
Chromosome . Primary Identifier  X Chromosome Location . Start  10773091
Chromosome Location . End  10782921 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T05A10.1j.4

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004862 sma-9 T05A10.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T05A10.1j T05A10.1j 4530   X: 10773091-10773654

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:T05A10.1j.4 10773091 10782921 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

26 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon250023   564   X: 10773091-10773654 Caenorhabditis elegans
Exon250044   156   X: 10773707-10773862 Caenorhabditis elegans
Exon250058   538   X: 10773931-10774468 Caenorhabditis elegans
Exon250072   128   X: 10775217-10775344 Caenorhabditis elegans
Exon250084   76   X: 10775530-10775605 Caenorhabditis elegans
Exon250098   410   X: 10775830-10776239 Caenorhabditis elegans
Exon250112   138   X: 10776288-10776425 Caenorhabditis elegans
Exon250127   219   X: 10776573-10776791 Caenorhabditis elegans
Exon250141   1523   X: 10776840-10778362 Caenorhabditis elegans
Exon250157   105   X: 10778436-10778540 Caenorhabditis elegans
Exon250172   121   X: 10778743-10778863 Caenorhabditis elegans
Exon250187   98   X: 10778910-10779007 Caenorhabditis elegans
Exon250202   116   X: 10779061-10779176 Caenorhabditis elegans
Exon250217   109   X: 10779262-10779370 Caenorhabditis elegans
Exon250233   223   X: 10779422-10779644 Caenorhabditis elegans
Exon250247   158   X: 10779689-10779846 Caenorhabditis elegans
Exon250262   276   X: 10779896-10780171 Caenorhabditis elegans
Exon250277   149   X: 10780228-10780376 Caenorhabditis elegans
Exon250292   143   X: 10780465-10780607 Caenorhabditis elegans
Exon250302   206   X: 10780896-10781101 Caenorhabditis elegans
Exon250311   208   X: 10781152-10781359 Caenorhabditis elegans
Exon250326   101   X: 10781498-10781598 Caenorhabditis elegans
Exon250339   244   X: 10781646-10781889 Caenorhabditis elegans
Exon250352   142   X: 10781940-10782081 Caenorhabditis elegans
Exon250365   137   X: 10782133-10782269 Caenorhabditis elegans
Exon250371   604   X: 10782318-10782921 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:T05A10.1j.4 10773091 10782921 1

1 Sequence

Length
6892

1 Sequence Ontology Term

Identifier Name Description
transcript