WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T05A10.1j.1 Sequence Name  T05A10.1j.1
Length (nt)  7128   Chromosome Location  X: 10773091-10782969
Chromosome . Primary Identifier  X Chromosome Location . Start  10773091
Chromosome Location . End  10782969 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T05A10.1j.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004862 sma-9 T05A10.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T05A10.1j T05A10.1j 4530   X: 10773091-10773654

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:T05A10.1j.1 10773091 10782969 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

24 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon250000   564   X: 10773091-10773654 Caenorhabditis elegans
Exon250014   156   X: 10773707-10773862 Caenorhabditis elegans
Exon250028   538   X: 10773931-10774468 Caenorhabditis elegans
Exon250042   128   X: 10775217-10775344 Caenorhabditis elegans
Exon250054   76   X: 10775530-10775605 Caenorhabditis elegans
Exon250068   410   X: 10775830-10776239 Caenorhabditis elegans
Exon250082   138   X: 10776288-10776425 Caenorhabditis elegans
Exon250097   219   X: 10776573-10776791 Caenorhabditis elegans
Exon250111   1523   X: 10776840-10778362 Caenorhabditis elegans
Exon250127   105   X: 10778436-10778540 Caenorhabditis elegans
Exon250142   121   X: 10778743-10778863 Caenorhabditis elegans
Exon250157   98   X: 10778910-10779007 Caenorhabditis elegans
Exon250172   116   X: 10779061-10779176 Caenorhabditis elegans
Exon250187   109   X: 10779262-10779370 Caenorhabditis elegans
Exon250203   223   X: 10779422-10779644 Caenorhabditis elegans
Exon250217   158   X: 10779689-10779846 Caenorhabditis elegans
Exon250232   276   X: 10779896-10780171 Caenorhabditis elegans
Exon250247   149   X: 10780228-10780376 Caenorhabditis elegans
Exon250262   143   X: 10780465-10780607 Caenorhabditis elegans
Exon250281   703   X: 10780896-10781598 Caenorhabditis elegans
Exon250309   244   X: 10781646-10781889 Caenorhabditis elegans
Exon250322   142   X: 10781940-10782081 Caenorhabditis elegans
Exon250335   137   X: 10782133-10782269 Caenorhabditis elegans
Exon250348   652   X: 10782318-10782969 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:T05A10.1j.1 10773091 10782969 1

1 Sequence

Length
7128

1 Sequence Ontology Term

Identifier Name Description
transcript