WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T05A10.1j.1 Sequence Name  T05A10.1j.1
Length (nt)  7128   Chromosome Location  X: 10773091-10782969
Chromosome . Primary Identifier  X Chromosome Location . Start  10773091
Chromosome Location . End  10782969 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T05A10.1j.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004862 sma-9 T05A10.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T05A10.1j T05A10.1j 4530   X: 10773091-10773654

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:T05A10.1j.1 10773091 10782969 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

24 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon250027   564   X: 10773091-10773654 Caenorhabditis elegans
Exon250041   156   X: 10773707-10773862 Caenorhabditis elegans
Exon250055   538   X: 10773931-10774468 Caenorhabditis elegans
Exon250069   128   X: 10775217-10775344 Caenorhabditis elegans
Exon250081   76   X: 10775530-10775605 Caenorhabditis elegans
Exon250095   410   X: 10775830-10776239 Caenorhabditis elegans
Exon250109   138   X: 10776288-10776425 Caenorhabditis elegans
Exon250124   219   X: 10776573-10776791 Caenorhabditis elegans
Exon250138   1523   X: 10776840-10778362 Caenorhabditis elegans
Exon250154   105   X: 10778436-10778540 Caenorhabditis elegans
Exon250169   121   X: 10778743-10778863 Caenorhabditis elegans
Exon250184   98   X: 10778910-10779007 Caenorhabditis elegans
Exon250199   116   X: 10779061-10779176 Caenorhabditis elegans
Exon250214   109   X: 10779262-10779370 Caenorhabditis elegans
Exon250230   223   X: 10779422-10779644 Caenorhabditis elegans
Exon250244   158   X: 10779689-10779846 Caenorhabditis elegans
Exon250259   276   X: 10779896-10780171 Caenorhabditis elegans
Exon250274   149   X: 10780228-10780376 Caenorhabditis elegans
Exon250289   143   X: 10780465-10780607 Caenorhabditis elegans
Exon250308   703   X: 10780896-10781598 Caenorhabditis elegans
Exon250336   244   X: 10781646-10781889 Caenorhabditis elegans
Exon250349   142   X: 10781940-10782081 Caenorhabditis elegans
Exon250362   137   X: 10782133-10782269 Caenorhabditis elegans
Exon250375   652   X: 10782318-10782969 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:T05A10.1j.1 10773091 10782969 1

1 Sequence

Length
7128

1 Sequence Ontology Term

Identifier Name Description
transcript