WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T05A10.1h.1 Sequence Name  T05A10.1h.1
Length (nt)  5949   Chromosome Location  X: 10773999-10782972
Chromosome . Primary Identifier  X Chromosome Location . Start  10773999
Chromosome Location . End  10782972 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T05A10.1h.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004862 sma-9 T05A10.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T05A10.1h T05A10.1h 1614   X: 10778988-10779007

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T05A10.1h.1 10773999 10782972 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

22 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon250060   470   X: 10773999-10774468 Caenorhabditis elegans
Exon250093   410   X: 10775830-10776239 Caenorhabditis elegans
Exon250107   138   X: 10776288-10776425 Caenorhabditis elegans
Exon250122   219   X: 10776573-10776791 Caenorhabditis elegans
Exon250136   1523   X: 10776840-10778362 Caenorhabditis elegans
Exon250151   105   X: 10778436-10778540 Caenorhabditis elegans
Exon250166   121   X: 10778743-10778863 Caenorhabditis elegans
Exon250181   98   X: 10778910-10779007 Caenorhabditis elegans
Exon250196   116   X: 10779061-10779176 Caenorhabditis elegans
Exon250211   109   X: 10779262-10779370 Caenorhabditis elegans
Exon250226   221   X: 10779422-10779642 Caenorhabditis elegans
Exon250241   158   X: 10779689-10779846 Caenorhabditis elegans
Exon250256   276   X: 10779896-10780171 Caenorhabditis elegans
Exon250271   149   X: 10780228-10780376 Caenorhabditis elegans
Exon250286   143   X: 10780465-10780607 Caenorhabditis elegans
Exon250297   206   X: 10780896-10781101 Caenorhabditis elegans
Exon250309   208   X: 10781152-10781359 Caenorhabditis elegans
Exon250323   101   X: 10781498-10781598 Caenorhabditis elegans
Exon250335   244   X: 10781646-10781889 Caenorhabditis elegans
Exon250347   142   X: 10781940-10782081 Caenorhabditis elegans
Exon250360   137   X: 10782133-10782269 Caenorhabditis elegans
Exon250376   655   X: 10782318-10782972 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T05A10.1h.1 10773999 10782972 1

1 Sequence

Length
5949

1 Sequence Ontology Term

Identifier Name Description
transcript