WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T05A10.1h.2 Sequence Name  T05A10.1h.2
Length (nt)  3418   Chromosome Location  X: 10777902-10782693
Chromosome . Primary Identifier  X Chromosome Location . Start  10777902
Chromosome Location . End  10782693 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T05A10.1h.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004862 sma-9 T05A10.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T05A10.1h T05A10.1h 1614   X: 10778988-10779007

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:T05A10.1h.2 10777902 10782693 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon250143   461   X: 10777902-10778362 Caenorhabditis elegans
Exon250152   105   X: 10778436-10778540 Caenorhabditis elegans
Exon250167   121   X: 10778743-10778863 Caenorhabditis elegans
Exon250182   98   X: 10778910-10779007 Caenorhabditis elegans
Exon250197   116   X: 10779061-10779176 Caenorhabditis elegans
Exon250212   109   X: 10779262-10779370 Caenorhabditis elegans
Exon250227   221   X: 10779422-10779642 Caenorhabditis elegans
Exon250242   158   X: 10779689-10779846 Caenorhabditis elegans
Exon250257   276   X: 10779896-10780171 Caenorhabditis elegans
Exon250272   149   X: 10780228-10780376 Caenorhabditis elegans
Exon250287   143   X: 10780465-10780607 Caenorhabditis elegans
Exon250298   206   X: 10780896-10781101 Caenorhabditis elegans
Exon250310   208   X: 10781152-10781359 Caenorhabditis elegans
Exon250328   392   X: 10781498-10781889 Caenorhabditis elegans
Exon250348   142   X: 10781940-10782081 Caenorhabditis elegans
Exon250361   137   X: 10782133-10782269 Caenorhabditis elegans
Exon250370   376   X: 10782318-10782693 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:T05A10.1h.2 10777902 10782693 1

1 Sequence

Length
3418

1 Sequence Ontology Term

Identifier Name Description
transcript