WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T05A10.5a.1 Sequence Name  T05A10.5a.1
Length (nt)  1493   Chromosome Location  X: 10789611-10792018
Chromosome . Primary Identifier  X Chromosome Location . Start  10789611
Chromosome Location . End  10792018 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T05A10.5a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00011462 vap-2 T05A10.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T05A10.5a T05A10.5a 1422   X: 10789682-10789799

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T05A10.5a.1 10789611 10792018 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon250368   189   X: 10789611-10789799 Caenorhabditis elegans
Exon250371   86   X: 10789853-10789938 Caenorhabditis elegans
Exon250374   111   X: 10789985-10790095 Caenorhabditis elegans
Exon250377   229   X: 10790169-10790397 Caenorhabditis elegans
Exon250380   216   X: 10790443-10790658 Caenorhabditis elegans
Exon250383   92   X: 10790854-10790945 Caenorhabditis elegans
Exon250386   145   X: 10790994-10791138 Caenorhabditis elegans
Exon250389   107   X: 10791184-10791290 Caenorhabditis elegans
Exon250393   158   X: 10791597-10791754 Caenorhabditis elegans
Exon250395   106   X: 10791817-10791922 Caenorhabditis elegans
Exon250397   54   X: 10791965-10792018 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T05A10.5a.1 10789611 10792018 -1

1 Sequence

Length
1493

1 Sequence Ontology Term

Identifier Name Description
transcript