WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T05A10.5b.1 Sequence Name  T05A10.5b.1
Length (nt)  1524   Chromosome Location  X: 10789682-10792535
Chromosome . Primary Identifier  X Chromosome Location . Start  10789682
Chromosome Location . End  10792535 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T05A10.5b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00011462 vap-2 T05A10.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T05A10.5b T05A10.5b 1524   X: 10789682-10789799

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T05A10.5b.1 10789682 10792535 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon250370   118   X: 10789682-10789799 Caenorhabditis elegans
Exon250372   86   X: 10789853-10789938 Caenorhabditis elegans
Exon250375   111   X: 10789985-10790095 Caenorhabditis elegans
Exon250378   229   X: 10790169-10790397 Caenorhabditis elegans
Exon250381   216   X: 10790443-10790658 Caenorhabditis elegans
Exon250384   92   X: 10790854-10790945 Caenorhabditis elegans
Exon250387   145   X: 10790994-10791138 Caenorhabditis elegans
Exon250390   107   X: 10791184-10791290 Caenorhabditis elegans
Exon250394   158   X: 10791597-10791754 Caenorhabditis elegans
Exon250396   106   X: 10791817-10791922 Caenorhabditis elegans
Exon250398   131   X: 10791965-10792095 Caenorhabditis elegans
Exon250399   25   X: 10792511-10792535 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T05A10.5b.1 10789682 10792535 -1

1 Sequence

Length
1524

1 Sequence Ontology Term

Identifier Name Description
transcript