WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T01A4.1a.1 Sequence Name  T01A4.1a.1
Length (nt)  4387   Chromosome Location  I: 4495392-4508940
Chromosome . Primary Identifier  I Chromosome Location . Start  4495392
Chromosome Location . End  4508940 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T01A4.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00020131 gcy-28 T01A4.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T01A4.1a T01A4.1a 3654   I: 4495392-4496115

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T01A4.1a.1 4495392 4508940 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon9990   724   I: 4495392-4496115 Caenorhabditis elegans
Exon9992   115   I: 4498008-4498122 Caenorhabditis elegans
Exon9995   202   I: 4499008-4499209 Caenorhabditis elegans
Exon9998   228   I: 4499693-4499920 Caenorhabditis elegans
Exon10001   120   I: 4500472-4500591 Caenorhabditis elegans
Exon10004   276   I: 4500647-4500922 Caenorhabditis elegans
Exon10008   330   I: 4502570-4502899 Caenorhabditis elegans
Exon10012   200   I: 4503270-4503469 Caenorhabditis elegans
Exon10016   145   I: 4504425-4504569 Caenorhabditis elegans
Exon10020   172   I: 4504638-4504809 Caenorhabditis elegans
Exon10024   156   I: 4505062-4505217 Caenorhabditis elegans
Exon10028   317   I: 4505722-4506038 Caenorhabditis elegans
Exon10032   238   I: 4506668-4506905 Caenorhabditis elegans
Exon10036   159   I: 4507152-4507310 Caenorhabditis elegans
Exon10040   99   I: 4507484-4507582 Caenorhabditis elegans
Exon10044   906   I: 4508035-4508940 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T01A4.1a.1 4495392 4508940 1

1 Sequence

Length
4387

1 Sequence Ontology Term

Identifier Name Description
transcript