WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C05A9.1b.1 Sequence Name  C05A9.1b.1
Length (nt)  3483   Chromosome Location  X: 10854381-10858712
Chromosome . Primary Identifier  X Chromosome Location . Start  10854381
Chromosome Location . End  10858712 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C05A9.1b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003999 pgp-5 C05A9.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C05A9.1b C05A9.1b 3483   X: 10854381-10854743

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C05A9.1b.1 10854381 10858712 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon251040   363   X: 10854381-10854743 Caenorhabditis elegans
Exon251042   204   X: 10854800-10855003 Caenorhabditis elegans
Exon251044   465   X: 10855050-10855514 Caenorhabditis elegans
Exon251046   129   X: 10855560-10855688 Caenorhabditis elegans
Exon251048   105   X: 10855739-10855843 Caenorhabditis elegans
Exon251050   363   X: 10855890-10856252 Caenorhabditis elegans
Exon251052   269   X: 10856298-10856566 Caenorhabditis elegans
Exon251054   100   X: 10856613-10856712 Caenorhabditis elegans
Exon251056   90   X: 10856761-10856850 Caenorhabditis elegans
Exon251058   612   X: 10856898-10857509 Caenorhabditis elegans
Exon251060   114   X: 10857752-10857865 Caenorhabditis elegans
Exon251062   172   X: 10857912-10858083 Caenorhabditis elegans
Exon251064   297   X: 10858125-10858421 Caenorhabditis elegans
Exon251066   134   X: 10858467-10858600 Caenorhabditis elegans
Exon251067   66   X: 10858647-10858712 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C05A9.1b.1 10854381 10858712 -1

1 Sequence

Length
3483

1 Sequence Ontology Term

Identifier Name Description
transcript