WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T21E8.1c.1 Sequence Name  T21E8.1c.1
Length (nt)  3774   Chromosome Location  X: 10871346-10877425
Chromosome . Primary Identifier  X Chromosome Location . Start  10871346
Chromosome Location . End  10877425 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T21E8.1c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004000 pgp-6 T21E8.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T21E8.1c T21E8.1c 3774   X: 10871346-10871708

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:T21E8.1c.1 10871346 10877425 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon251134   363   X: 10871346-10871708 Caenorhabditis elegans
Exon251137   204   X: 10871754-10871957 Caenorhabditis elegans
Exon251140   465   X: 10872008-10872472 Caenorhabditis elegans
Exon251143   129   X: 10872523-10872651 Caenorhabditis elegans
Exon251146   105   X: 10872696-10872800 Caenorhabditis elegans
Exon251149   363   X: 10872865-10873227 Caenorhabditis elegans
Exon251152   284   X: 10873274-10873557 Caenorhabditis elegans
Exon251155   97   X: 10873608-10873704 Caenorhabditis elegans
Exon251158   90   X: 10873945-10874034 Caenorhabditis elegans
Exon251161   615   X: 10874079-10874693 Caenorhabditis elegans
Exon251164   114   X: 10874743-10874856 Caenorhabditis elegans
Exon251167   172   X: 10874900-10875071 Caenorhabditis elegans
Exon251170   297   X: 10875270-10875566 Caenorhabditis elegans
Exon251173   134   X: 10875614-10875747 Caenorhabditis elegans
Exon251176   110   X: 10875793-10875902 Caenorhabditis elegans
Exon251179   157   X: 10875953-10876109 Caenorhabditis elegans
Exon251180   67   X: 10876162-10876228 Caenorhabditis elegans
Exon251182   8   X: 10877418-10877425 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:T21E8.1c.1 10871346 10877425 -1

1 Sequence

Length
3774

1 Sequence Ontology Term

Identifier Name Description
transcript