WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F58A3.2a.2 Sequence Name  F58A3.2a.2
Length (nt)  4669   Chromosome Location  X: 11016410-11023408
Chromosome . Primary Identifier  X Chromosome Location . Start  11016410
Chromosome Location . End  11023408 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F58A3.2a.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001184 egl-15 F58A3.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F58A3.2a F58A3.2a 3123   X: 11016441-11016528

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F58A3.2a.2 11016410 11023408 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon251496   119   X: 11016410-11016528 Caenorhabditis elegans
Exon251502   62   X: 11016582-11016643 Caenorhabditis elegans
Exon251515   162   X: 11016691-11016852 Caenorhabditis elegans
Exon251528   70   X: 11017436-11017505 Caenorhabditis elegans
Exon251541   351   X: 11017580-11017930 Caenorhabditis elegans
Exon251554   236   X: 11018215-11018450 Caenorhabditis elegans
Exon251567   240   X: 11018525-11018764 Caenorhabditis elegans
Exon251580   162   X: 11018813-11018974 Caenorhabditis elegans
Exon251593   108   X: 11019021-11019128 Caenorhabditis elegans
Exon251606   437   X: 11019178-11019614 Caenorhabditis elegans
Exon251619   79   X: 11019683-11019761 Caenorhabditis elegans
Exon251632   294   X: 11019817-11020110 Caenorhabditis elegans
Exon251645   197   X: 11020287-11020483 Caenorhabditis elegans
Exon251658   84   X: 11020534-11020617 Caenorhabditis elegans
Exon251671   105   X: 11021150-11021254 Caenorhabditis elegans
Exon251684   163   X: 11021309-11021471 Caenorhabditis elegans
Exon251697   114   X: 11021517-11021630 Caenorhabditis elegans
Exon251721   1686   X: 11021723-11023408 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F58A3.2a.2 11016410 11023408 1

1 Sequence

Length
4669

1 Sequence Ontology Term

Identifier Name Description
transcript