WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:R08B4.1.2 Sequence Name  R08B4.1.2
Length (nt)  3723   Chromosome Location  X: 11109440-11115841
Chromosome . Primary Identifier  X Chromosome Location . Start  11109440
Chromosome Location . End  11115841 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R08B4.1.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001690 grd-1 R08B4.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R08B4.1 R08B4.1 3414   X: 11109626-11109764

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:R08B4.1.2 11109440 11115841 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon251939   325   X: 11109440-11109764 Caenorhabditis elegans
Exon251942   119   X: 11110744-11110862 Caenorhabditis elegans
Exon251944   156   X: 11110923-11111078 Caenorhabditis elegans
Exon251946   202   X: 11111735-11111936 Caenorhabditis elegans
Exon251948   246   X: 11111982-11112227 Caenorhabditis elegans
Exon251950   107   X: 11112429-11112535 Caenorhabditis elegans
Exon251952   975   X: 11112649-11113623 Caenorhabditis elegans
Exon251954   375   X: 11113673-11114047 Caenorhabditis elegans
Exon251956   43   X: 11114093-11114135 Caenorhabditis elegans
Exon251958   251   X: 11114254-11114504 Caenorhabditis elegans
Exon251960   279   X: 11114554-11114832 Caenorhabditis elegans
Exon251962   136   X: 11114878-11115013 Caenorhabditis elegans
Exon251964   257   X: 11115185-11115441 Caenorhabditis elegans
Exon251966   60   X: 11115484-11115543 Caenorhabditis elegans
Exon251967   100   X: 11115602-11115701 Caenorhabditis elegans
Exon251969   92   X: 11115750-11115841 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:R08B4.1.2 11109440 11115841 1

1 Sequence

Length
3723

1 Sequence Ontology Term

Identifier Name Description
transcript