WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:R08B4.1.1 Sequence Name  R08B4.1.1
Length (nt)  3817   Chromosome Location  X: 11109440-11115887
Chromosome . Primary Identifier  X Chromosome Location . Start  11109440
Chromosome Location . End  11115887 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R08B4.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001690 grd-1 R08B4.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R08B4.1 R08B4.1 3414   X: 11109626-11109764

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:R08B4.1.1 11109440 11115887 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon251940   325   X: 11109440-11109764 Caenorhabditis elegans
Exon251941   119   X: 11110744-11110862 Caenorhabditis elegans
Exon251943   156   X: 11110923-11111078 Caenorhabditis elegans
Exon251945   202   X: 11111735-11111936 Caenorhabditis elegans
Exon251947   246   X: 11111982-11112227 Caenorhabditis elegans
Exon251949   107   X: 11112429-11112535 Caenorhabditis elegans
Exon251951   975   X: 11112649-11113623 Caenorhabditis elegans
Exon251953   375   X: 11113673-11114047 Caenorhabditis elegans
Exon251955   43   X: 11114093-11114135 Caenorhabditis elegans
Exon251957   251   X: 11114254-11114504 Caenorhabditis elegans
Exon251959   279   X: 11114554-11114832 Caenorhabditis elegans
Exon251961   136   X: 11114878-11115013 Caenorhabditis elegans
Exon251963   257   X: 11115185-11115441 Caenorhabditis elegans
Exon251965   60   X: 11115484-11115543 Caenorhabditis elegans
Exon251968   286   X: 11115602-11115887 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:R08B4.1.1 11109440 11115887 1

1 Sequence

Length
3817

1 Sequence Ontology Term

Identifier Name Description
transcript