WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F38B2.1b.1 Sequence Name  F38B2.1b.1
Length (nt)  1976   Chromosome Location  X: 11271553-11275485
Chromosome . Primary Identifier  X Chromosome Location . Start  11271553
Chromosome Location . End  11275485 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F38B2.1b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002050 ifa-1 F38B2.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F38B2.1b F38B2.1b 1728   X: 11271659-11271680

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F38B2.1b.1 11271553 11275485 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

9 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon252343   128   X: 11271553-11271680 Caenorhabditis elegans
Exon252347   72   X: 11273270-11273341 Caenorhabditis elegans
Exon252352   164   X: 11273390-11273553 Caenorhabditis elegans
Exon252357   114   X: 11273601-11273714 Caenorhabditis elegans
Exon252362   98   X: 11273763-11273860 Caenorhabditis elegans
Exon252367   860   X: 11273937-11274796 Caenorhabditis elegans
Exon252372   140   X: 11274844-11274983 Caenorhabditis elegans
Exon252377   219   X: 11275033-11275251 Caenorhabditis elegans
Exon252383   181   X: 11275305-11275485 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F38B2.1b.1 11271553 11275485 1

1 Sequence

Length
1976

1 Sequence Ontology Term

Identifier Name Description
transcript