WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F38B2.3a.1 Sequence Name  F38B2.3a.1
Length (nt)  2286   Chromosome Location  X: 11281716-11286346
Chromosome . Primary Identifier  X Chromosome Location . Start  11281716
Chromosome Location . End  11286346 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F38B2.3a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00009530 F38B2.3 F38B2.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F38B2.3a F38B2.3a 2259   X: 11281716-11281791

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F38B2.3a.1 11281716 11286346 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon252393   76   X: 11281716-11281791 Caenorhabditis elegans
Exon252394   181   X: 11281842-11282022 Caenorhabditis elegans
Exon252396   116   X: 11282526-11282641 Caenorhabditis elegans
Exon252398   102   X: 11282686-11282787 Caenorhabditis elegans
Exon252400   127   X: 11282832-11282958 Caenorhabditis elegans
Exon252402   134   X: 11283357-11283490 Caenorhabditis elegans
Exon252404   211   X: 11283536-11283746 Caenorhabditis elegans
Exon252406   146   X: 11284044-11284189 Caenorhabditis elegans
Exon252408   250   X: 11284237-11284486 Caenorhabditis elegans
Exon252410   122   X: 11284529-11284650 Caenorhabditis elegans
Exon252412   142   X: 11284890-11285031 Caenorhabditis elegans
Exon252414   93   X: 11285275-11285367 Caenorhabditis elegans
Exon252416   146   X: 11285415-11285560 Caenorhabditis elegans
Exon252418   128   X: 11285624-11285751 Caenorhabditis elegans
Exon252420   263   X: 11285797-11286059 Caenorhabditis elegans
Exon252422   49   X: 11286298-11286346 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F38B2.3a.1 11281716 11286346 -1

1 Sequence

Length
2286

1 Sequence Ontology Term

Identifier Name Description
transcript