WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F42E11.1b.1 Sequence Name  F42E11.1b.1
Length (nt)  3917   Chromosome Location  X: 11357816-11363968
Chromosome . Primary Identifier  X Chromosome Location . Start  11357816
Chromosome Location . End  11363968 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F42E11.1b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003998 pgp-4 F42E11.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F42E11.1b F42E11.1b 3801   X: 11359168-11359263

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F42E11.1b.1 11357816 11363968 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon252590   42   X: 11357816-11357857 Caenorhabditis elegans
Exon252595   111   X: 11359153-11359263 Caenorhabditis elegans
Exon252597   103   X: 11359316-11359418 Caenorhabditis elegans
Exon252600   143   X: 11359465-11359607 Caenorhabditis elegans
Exon252603   431   X: 11359954-11360384 Caenorhabditis elegans
Exon252606   117   X: 11360432-11360548 Caenorhabditis elegans
Exon252609   406   X: 11360654-11361059 Caenorhabditis elegans
Exon252612   574   X: 11361109-11361682 Caenorhabditis elegans
Exon252615   590   X: 11361733-11362322 Caenorhabditis elegans
Exon252618   204   X: 11362377-11362580 Caenorhabditis elegans
Exon252621   242   X: 11362637-11362878 Caenorhabditis elegans
Exon252624   157   X: 11362925-11363081 Caenorhabditis elegans
Exon252627   482   X: 11363127-11363608 Caenorhabditis elegans
Exon252629   315   X: 11363654-11363968 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F42E11.1b.1 11357816 11363968 1

1 Sequence

Length
3917

1 Sequence Ontology Term

Identifier Name Description
transcript