WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F42E11.1b.2 Sequence Name  F42E11.1b.2
Length (nt)  3918   Chromosome Location  X: 11359152-11364010
Chromosome . Primary Identifier  X Chromosome Location . Start  11359152
Chromosome Location . End  11364010 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F42E11.1b.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003998 pgp-4 F42E11.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F42E11.1b F42E11.1b 3801   X: 11359168-11359263

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F42E11.1b.2 11359152 11364010 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon252593   112   X: 11359152-11359263 Caenorhabditis elegans
Exon252598   103   X: 11359316-11359418 Caenorhabditis elegans
Exon252601   143   X: 11359465-11359607 Caenorhabditis elegans
Exon252604   431   X: 11359954-11360384 Caenorhabditis elegans
Exon252607   117   X: 11360432-11360548 Caenorhabditis elegans
Exon252610   406   X: 11360654-11361059 Caenorhabditis elegans
Exon252613   574   X: 11361109-11361682 Caenorhabditis elegans
Exon252616   590   X: 11361733-11362322 Caenorhabditis elegans
Exon252619   204   X: 11362377-11362580 Caenorhabditis elegans
Exon252622   242   X: 11362637-11362878 Caenorhabditis elegans
Exon252625   157   X: 11362925-11363081 Caenorhabditis elegans
Exon252628   482   X: 11363127-11363608 Caenorhabditis elegans
Exon252630   357   X: 11363654-11364010 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F42E11.1b.2 11359152 11364010 1

1 Sequence

Length
3918

1 Sequence Ontology Term

Identifier Name Description
transcript