WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F08B12.3b.1 Sequence Name  F08B12.3b.1
Length (nt)  3725   Chromosome Location  X: 11394605-11400993
Chromosome . Primary Identifier  X Chromosome Location . Start  11394605
Chromosome Location . End  11400993 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F08B12.3b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004831 slo-2 F08B12.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F08B12.3b F08B12.3b 3324   X: 11394699-11394846

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F08B12.3b.1 11394605 11400993 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon252699   242   X: 11394605-11394846 Caenorhabditis elegans
Exon252708   88   X: 11394909-11394996 Caenorhabditis elegans
Exon252718   124   X: 11395267-11395390 Caenorhabditis elegans
Exon252726   123   X: 11395446-11395568 Caenorhabditis elegans
Exon252734   84   X: 11395617-11395700 Caenorhabditis elegans
Exon252742   343   X: 11395744-11396086 Caenorhabditis elegans
Exon252750   801   X: 11396349-11397149 Caenorhabditis elegans
Exon252758   150   X: 11397194-11397343 Caenorhabditis elegans
Exon252766   109   X: 11397394-11397502 Caenorhabditis elegans
Exon252774   179   X: 11397623-11397801 Caenorhabditis elegans
Exon252782   131   X: 11397848-11397978 Caenorhabditis elegans
Exon252790   441   X: 11398024-11398464 Caenorhabditis elegans
Exon252798   84   X: 11398512-11398595 Caenorhabditis elegans
Exon252806   75   X: 11398646-11398720 Caenorhabditis elegans
Exon252814   109   X: 11398770-11398878 Caenorhabditis elegans
Exon252822   145   X: 11399264-11399408 Caenorhabditis elegans
Exon252830   77   X: 11399466-11399542 Caenorhabditis elegans
Exon252838   420   X: 11400574-11400993 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F08B12.3b.1 11394605 11400993 -1

1 Sequence

Length
3725

1 Sequence Ontology Term

Identifier Name Description
transcript