WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F08B12.3a.1 Sequence Name  F08B12.3a.1
Length (nt)  3759   Chromosome Location  X: 11394607-11400993
Chromosome . Primary Identifier  X Chromosome Location . Start  11394607
Chromosome Location . End  11400993 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F08B12.3a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004831 slo-2 F08B12.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F08B12.3a F08B12.3a 3360   X: 11394699-11394846

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F08B12.3a.1 11394607 11400993 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

19 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon252700   240   X: 11394607-11394846 Caenorhabditis elegans
Exon252707   88   X: 11394909-11394996 Caenorhabditis elegans
Exon252715   36   X: 11395185-11395220 Caenorhabditis elegans
Exon252717   124   X: 11395267-11395390 Caenorhabditis elegans
Exon252725   123   X: 11395446-11395568 Caenorhabditis elegans
Exon252733   84   X: 11395617-11395700 Caenorhabditis elegans
Exon252741   343   X: 11395744-11396086 Caenorhabditis elegans
Exon252749   801   X: 11396349-11397149 Caenorhabditis elegans
Exon252757   150   X: 11397194-11397343 Caenorhabditis elegans
Exon252765   109   X: 11397394-11397502 Caenorhabditis elegans
Exon252773   179   X: 11397623-11397801 Caenorhabditis elegans
Exon252781   131   X: 11397848-11397978 Caenorhabditis elegans
Exon252789   441   X: 11398024-11398464 Caenorhabditis elegans
Exon252797   84   X: 11398512-11398595 Caenorhabditis elegans
Exon252805   75   X: 11398646-11398720 Caenorhabditis elegans
Exon252813   109   X: 11398770-11398878 Caenorhabditis elegans
Exon252821   145   X: 11399264-11399408 Caenorhabditis elegans
Exon252829   77   X: 11399466-11399542 Caenorhabditis elegans
Exon252837   420   X: 11400574-11400993 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F08B12.3a.1 11394607 11400993 -1

1 Sequence

Length
3759

1 Sequence Ontology Term

Identifier Name Description
transcript