WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F08B12.3d.1 Sequence Name  F08B12.3d.1
Length (nt)  3442   Chromosome Location  X: 11394608-11401307
Chromosome . Primary Identifier  X Chromosome Location . Start  11394608
Chromosome Location . End  11401307 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F08B12.3d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004831 slo-2 F08B12.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F08B12.3d F08B12.3d 3351   X: 11394699-11394846

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F08B12.3d.1 11394608 11401307 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

19 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon252701   239   X: 11394608-11394846 Caenorhabditis elegans
Exon252710   88   X: 11394909-11394996 Caenorhabditis elegans
Exon252716   36   X: 11395185-11395220 Caenorhabditis elegans
Exon252720   124   X: 11395267-11395390 Caenorhabditis elegans
Exon252728   123   X: 11395446-11395568 Caenorhabditis elegans
Exon252736   84   X: 11395617-11395700 Caenorhabditis elegans
Exon252744   343   X: 11395744-11396086 Caenorhabditis elegans
Exon252752   801   X: 11396349-11397149 Caenorhabditis elegans
Exon252760   150   X: 11397194-11397343 Caenorhabditis elegans
Exon252768   109   X: 11397394-11397502 Caenorhabditis elegans
Exon252776   179   X: 11397623-11397801 Caenorhabditis elegans
Exon252784   131   X: 11397848-11397978 Caenorhabditis elegans
Exon252792   441   X: 11398024-11398464 Caenorhabditis elegans
Exon252800   84   X: 11398512-11398595 Caenorhabditis elegans
Exon252808   75   X: 11398646-11398720 Caenorhabditis elegans
Exon252816   109   X: 11398770-11398878 Caenorhabditis elegans
Exon252824   145   X: 11399264-11399408 Caenorhabditis elegans
Exon252832   77   X: 11399466-11399542 Caenorhabditis elegans
Exon252839   104   X: 11401204-11401307 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F08B12.3d.1 11394608 11401307 -1

1 Sequence

Length
3442

1 Sequence Ontology Term

Identifier Name Description
transcript