WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F08B12.3c.1 Sequence Name  F08B12.3c.1
Length (nt)  3402   Chromosome Location  X: 11394609-11401561
Chromosome . Primary Identifier  X Chromosome Location . Start  11394609
Chromosome Location . End  11401561 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F08B12.3c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004831 slo-2 F08B12.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F08B12.3c F08B12.3c 3261   X: 11394699-11394846

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F08B12.3c.1 11394609 11401561 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon252702   238   X: 11394609-11394846 Caenorhabditis elegans
Exon252709   88   X: 11394909-11394996 Caenorhabditis elegans
Exon252719   124   X: 11395267-11395390 Caenorhabditis elegans
Exon252727   123   X: 11395446-11395568 Caenorhabditis elegans
Exon252735   84   X: 11395617-11395700 Caenorhabditis elegans
Exon252743   343   X: 11395744-11396086 Caenorhabditis elegans
Exon252751   801   X: 11396349-11397149 Caenorhabditis elegans
Exon252759   150   X: 11397194-11397343 Caenorhabditis elegans
Exon252767   109   X: 11397394-11397502 Caenorhabditis elegans
Exon252775   179   X: 11397623-11397801 Caenorhabditis elegans
Exon252783   131   X: 11397848-11397978 Caenorhabditis elegans
Exon252791   441   X: 11398024-11398464 Caenorhabditis elegans
Exon252799   84   X: 11398512-11398595 Caenorhabditis elegans
Exon252807   75   X: 11398646-11398720 Caenorhabditis elegans
Exon252815   109   X: 11398770-11398878 Caenorhabditis elegans
Exon252823   145   X: 11399264-11399408 Caenorhabditis elegans
Exon252831   77   X: 11399466-11399542 Caenorhabditis elegans
Exon252840   101   X: 11401461-11401561 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F08B12.3c.1 11394609 11401561 -1

1 Sequence

Length
3402

1 Sequence Ontology Term

Identifier Name Description
transcript