WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F56A3.1.1 Sequence Name  F56A3.1.1
Length (nt)  2483   Chromosome Location  I: 5190138-5195243
Chromosome . Primary Identifier  I Chromosome Location . Start  5190138
Chromosome Location . End  5195243 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F56A3.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018908 fncm-1 F56A3.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F56A3.1 F56A3.1 2352   I: 5190148-5190455

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F56A3.1.1 5190138 5195243 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon11998   318   I: 5190138-5190455 Caenorhabditis elegans
Exon11999   88   I: 5190527-5190614 Caenorhabditis elegans
Exon12000   110   I: 5190664-5190773 Caenorhabditis elegans
Exon12001   301   I: 5190820-5191120 Caenorhabditis elegans
Exon12002   143   I: 5191614-5191756 Caenorhabditis elegans
Exon12003   440   I: 5191801-5192240 Caenorhabditis elegans
Exon12004   176   I: 5192289-5192464 Caenorhabditis elegans
Exon12005   180   I: 5192666-5192845 Caenorhabditis elegans
Exon12006   89   I: 5192895-5192983 Caenorhabditis elegans
Exon12007   126   I: 5193029-5193154 Caenorhabditis elegans
Exon12008   106   I: 5193550-5193655 Caenorhabditis elegans
Exon12009   99   I: 5193916-5194014 Caenorhabditis elegans
Exon12010   104   I: 5194063-5194166 Caenorhabditis elegans
Exon12011   203   I: 5195041-5195243 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F56A3.1.1 5190138 5195243 1

1 Sequence

Length
2483

1 Sequence Ontology Term

Identifier Name Description
transcript