WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F46C3.3c.1 Sequence Name  F46C3.3c.1
Length (nt)  7962   Chromosome Location  X: 11420465-11433585
Chromosome . Primary Identifier  X Chromosome Location . Start  11420465
Chromosome Location . End  11433585 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F46C3.3c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002037 hum-4 F46C3.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F46C3.3c F46C3.3c 2892   X: 11420743-11420823

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F46C3.3c.1 11420465 11433585 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

41 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon252901   359   X: 11420465-11420823 Caenorhabditis elegans
Exon252913   102   X: 11421101-11421202 Caenorhabditis elegans
Exon252924   167   X: 11421273-11421439 Caenorhabditis elegans
Exon252935   143   X: 11421490-11421632 Caenorhabditis elegans
Exon252946   140   X: 11422050-11422189 Caenorhabditis elegans
Exon252957   161   X: 11422239-11422399 Caenorhabditis elegans
Exon252968   175   X: 11422446-11422620 Caenorhabditis elegans
Exon252979   95   X: 11422702-11422796 Caenorhabditis elegans
Exon252990   134   X: 11422862-11422995 Caenorhabditis elegans
Exon253001   280   X: 11423153-11423432 Caenorhabditis elegans
Exon253012   109   X: 11423485-11423593 Caenorhabditis elegans
Exon253023   150   X: 11423644-11423793 Caenorhabditis elegans
Exon253034   253   X: 11423847-11424099 Caenorhabditis elegans
Exon253045   125   X: 11424154-11424278 Caenorhabditis elegans
Exon253056   119   X: 11424878-11424996 Caenorhabditis elegans
Exon253067   237   X: 11425042-11425278 Caenorhabditis elegans
Exon253078   121   X: 11425328-11425448 Caenorhabditis elegans
Exon253093   174   X: 11425682-11425855 Caenorhabditis elegans
Exon253103   127   X: 11425904-11426030 Caenorhabditis elegans
Exon253114   83   X: 11426237-11426319 Caenorhabditis elegans
Exon253124   49   X: 11426977-11427025 Caenorhabditis elegans
Exon253133   122   X: 11427097-11427218 Caenorhabditis elegans
Exon253144   195   X: 11427499-11427693 Caenorhabditis elegans
Exon253156   476   X: 11427743-11428218 Caenorhabditis elegans
Exon253166   227   X: 11428401-11428627 Caenorhabditis elegans
Exon253171   154   X: 11428738-11428891 Caenorhabditis elegans
Exon253175   125   X: 11428940-11429064 Caenorhabditis elegans
Exon253179   195   X: 11429112-11429306 Caenorhabditis elegans
Exon253183   135   X: 11429361-11429495 Caenorhabditis elegans
Exon253187   161   X: 11429540-11429700 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F46C3.3c.1 11420465 11433585 -1

1 Sequence

Length
7962

1 Sequence Ontology Term

Identifier Name Description
transcript