WormMine: Gene WBGene00195614

• WormBase Gene ID: WBGene00195614
• Gene Name: F48C5.4
• Sequence Name: F48C5.4
• Organism: Caenorhabditis elegans
• Automated Description: Is affected by eat-2 and ogt-1 based on microarray and RNA-seq studies. Is affected by silicon dioxide nanoparticle based on microarray studies.
• Biotype: SO:0001263
• Genetic Position: :±
• Length (nt): 72

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00195614

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:F48C5.4	F48C5.4	72	X: 11450290-11450361

Other

0 CDSs

0 RNAi Result

5 Allele

• gk964260
• gk964029
• gk962707
• gk964028
• gk963810

1 Chromosome

• WormBase ID: X
• Organism: Caenorhabditis elegans
• Length (nt): 17718942

1 Chromosome Location

• Feature . Primary Identifier: WBGene00195614
• Start: 11450290
• End: 11450361
• Strand: -1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrX_11448508..11450289
• Length (nt): 1782
• Chromosome Location: X: 11448508-11450289
• Organism: Caenorhabditis elegans

3 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts that showed significantly increased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type.	DESeq2, fold change > 2, FDR < 0.05.	WBPaper00066485:ogt-1(ok1474)_upregulated_neuron
	Transcripts that showed significantly increased expression in eat-2(ad465) comparing to in N2.	Student's t-test, fold change > 2, p-value < 0.05.	WBPaper00055386:eat-2(ad465)_upregulated
	Transcripts that showed significantly decreased expression in animals after 24 hour exposure to 100ug per ml silica nanoparticles (SiNPs).	The random variance model (RVM)t-test was applied toidentify differentially expressed mRNAs and miRNAsbetween the SiNPs-treated group and the control group. P-value <0.05 and fold change (FC) >1.5 were considered as the threshold screening between the SiNP-treated groupand the control group.	WBPaper00060100:SiNP_downregulated_mRNA

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00195614
• Start: 11450290
• End: 11450361
• Strand: -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 72

1 Sequence Ontology Term