WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F29G6.3b.1 Sequence Name  F29G6.3b.1
Length (nt)  6436   Chromosome Location  X: 11511555-11519063
Chromosome . Primary Identifier  X Chromosome Location . Start  11511555
Chromosome Location . End  11519063 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F29G6.3b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00009259 hpo-34 F29G6.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F29G6.3b F29G6.3b 5358   X: 11512963-11515071

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F29G6.3b.1 11511555 11519063 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon253368   291   X: 11511555-11511845 Caenorhabditis elegans
Exon253376   48   X: 11511892-11511939 Caenorhabditis elegans
Exon253383   108   X: 11511986-11512093 Caenorhabditis elegans
Exon253390   272   X: 11512138-11512409 Caenorhabditis elegans
Exon253396   58   X: 11512523-11512580 Caenorhabditis elegans
Exon253403   138   X: 11512662-11512799 Caenorhabditis elegans
Exon253409   2226   X: 11512846-11515071 Caenorhabditis elegans
Exon253416   2385   X: 11515120-11517504 Caenorhabditis elegans
Exon253422   108   X: 11517551-11517658 Caenorhabditis elegans
Exon253429   102   X: 11517705-11517806 Caenorhabditis elegans
Exon253436   105   X: 11517854-11517958 Caenorhabditis elegans
Exon253443   118   X: 11518005-11518122 Caenorhabditis elegans
Exon253450   101   X: 11518180-11518280 Caenorhabditis elegans
Exon253459   66   X: 11518324-11518389 Caenorhabditis elegans
Exon253465   81   X: 11518441-11518521 Caenorhabditis elegans
Exon253471   54   X: 11518734-11518787 Caenorhabditis elegans
Exon253477   101   X: 11518845-11518945 Caenorhabditis elegans
Exon253485   74   X: 11518990-11519063 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F29G6.3b.1 11511555 11519063 -1

1 Sequence

Length
6436

1 Sequence Ontology Term

Identifier Name Description
transcript