WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C35C5.1.1 Sequence Name  C35C5.1.1
Length (nt)  9247   Chromosome Location  X: 11522707-11533450
Chromosome . Primary Identifier  X Chromosome Location . Start  11522707
Chromosome Location . End  11533450 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C35C5.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004746 sdc-2 C35C5.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C35C5.1 C35C5.1 8889   X: 11522739-11523857

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C35C5.1.1 11522707 11533450 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

19 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon253516   1151   X: 11522707-11523857 Caenorhabditis elegans
Exon253517   236   X: 11523903-11524138 Caenorhabditis elegans
Exon253518   219   X: 11524584-11524802 Caenorhabditis elegans
Exon253519   154   X: 11524853-11525006 Caenorhabditis elegans
Exon253521   66   X: 11525065-11525130 Caenorhabditis elegans
Exon253522   551   X: 11525174-11525724 Caenorhabditis elegans
Exon253524   335   X: 11525771-11526105 Caenorhabditis elegans
Exon253525   131   X: 11526152-11526282 Caenorhabditis elegans
Exon253526   1191   X: 11526424-11527614 Caenorhabditis elegans
Exon253527   78   X: 11527765-11527842 Caenorhabditis elegans
Exon253528   1660   X: 11527892-11529551 Caenorhabditis elegans
Exon253529   87   X: 11529605-11529691 Caenorhabditis elegans
Exon253530   285   X: 11529765-11530049 Caenorhabditis elegans
Exon253531   869   X: 11530096-11530964 Caenorhabditis elegans
Exon253532   381   X: 11531020-11531400 Caenorhabditis elegans
Exon253533   290   X: 11531451-11531740 Caenorhabditis elegans
Exon253534   67   X: 11531790-11531856 Caenorhabditis elegans
Exon253535   944   X: 11531906-11532849 Caenorhabditis elegans
Exon253536   552   X: 11532899-11533450 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C35C5.1.1 11522707 11533450 1

1 Sequence

Length
9247

1 Sequence Ontology Term

Identifier Name Description
transcript