WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:H05G16.1a.1 Sequence Name  H05G16.1a.1
Length (nt)  4289   Chromosome Location  X: 11572511-11581760
Chromosome . Primary Identifier  X Chromosome Location . Start  11572511
Chromosome Location . End  11581760 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
H05G16.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001490 frm-3 H05G16.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:H05G16.1a H05G16.1a 3276   X: 11576256-11576381

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:H05G16.1a.1 11572511 11581760 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon253645   83   X: 11572511-11572593 Caenorhabditis elegans
Exon253648   133   X: 11576249-11576381 Caenorhabditis elegans
Exon253650   105   X: 11576442-11576546 Caenorhabditis elegans
Exon253653   125   X: 11576609-11576733 Caenorhabditis elegans
Exon253657   97   X: 11577645-11577741 Caenorhabditis elegans
Exon253660   125   X: 11577792-11577916 Caenorhabditis elegans
Exon253663   244   X: 11577960-11578203 Caenorhabditis elegans
Exon253666   161   X: 11578254-11578414 Caenorhabditis elegans
Exon253669   75   X: 11578460-11578534 Caenorhabditis elegans
Exon253673   3141   X: 11578620-11581760 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:H05G16.1a.1 11572511 11581760 1

1 Sequence

Length
4289

1 Sequence Ontology Term

Identifier Name Description
transcript