WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F52D10.1.1 Sequence Name  F52D10.1.1
Length (nt)  2279   Chromosome Location  X: 11585675-11589717
Chromosome . Primary Identifier  X Chromosome Location . Start  11585675
Chromosome Location . End  11589717 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F52D10.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00009929 abts-2 F52D10.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F52D10.1 F52D10.1 2214   X: 11585680-11585831

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F52D10.1.1 11585675 11589717 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon253695   157   X: 11585675-11585831 Caenorhabditis elegans
Exon253696   177   X: 11585928-11586104 Caenorhabditis elegans
Exon253697   124   X: 11586155-11586278 Caenorhabditis elegans
Exon253698   102   X: 11586326-11586427 Caenorhabditis elegans
Exon253699   111   X: 11586878-11586988 Caenorhabditis elegans
Exon253700   85   X: 11587038-11587122 Caenorhabditis elegans
Exon253701   123   X: 11587175-11587297 Caenorhabditis elegans
Exon253702   114   X: 11587341-11587454 Caenorhabditis elegans
Exon253703   133   X: 11587502-11587634 Caenorhabditis elegans
Exon253704   74   X: 11587679-11587752 Caenorhabditis elegans
Exon253705   151   X: 11587952-11588102 Caenorhabditis elegans
Exon253706   92   X: 11588144-11588235 Caenorhabditis elegans
Exon253707   169   X: 11588284-11588452 Caenorhabditis elegans
Exon253708   174   X: 11588501-11588674 Caenorhabditis elegans
Exon253709   119   X: 11588876-11588994 Caenorhabditis elegans
Exon253710   80   X: 11589253-11589332 Caenorhabditis elegans
Exon253711   170   X: 11589380-11589549 Caenorhabditis elegans
Exon253712   124   X: 11589594-11589717 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F52D10.1.1 11585675 11589717 1

1 Sequence

Length
2279

1 Sequence Ontology Term

Identifier Name Description
transcript