WormMine: Gene WBGene00197592

• WormBase Gene ID: WBGene00197592
• Gene Name: F52D10.9
• Sequence Name: F52D10.9
• Organism: Caenorhabditis elegans
• Automated Description: Is affected by pmt-2 and ogt-1 based on microarray and RNA-seq studies.
• Biotype: SO:0001263
• Genetic Position: :±
• Length (nt): 149

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00197592

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:F52D10.9	F52D10.9	149	X: 11606129-11606277

Other

0 CDSs

0 RNAi Result

8 Allele

• gk964260
• gk964029
• gk962707
• gk964028
• gk963810
• gk338245
• gk666309
• WBVar01820537

1 Chromosome

• WormBase ID: X
• Organism: Caenorhabditis elegans
• Length (nt): 17718942

1 Chromosome Location

• Feature . Primary Identifier: WBGene00197592
• Start: 11606129
• End: 11606277
• Strand: -1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrX_11605990..11606128
• Length (nt): 139
• Chromosome Location: X: 11605990-11606128
• Organism: Caenorhabditis elegans

2 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts that showed significantly decreased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type.	DESeq2, fold change > 2, FDR < 0.05.	WBPaper00066485:ogt-1(ok1474)_downregulated_neuron
	Transcripts that showed significantly decreased expression in pmt-2(RNAi) animals comparing to control animals iinjected with empty vector.	Fold-change > 1.5, ANOVA P values < 0.05.	WBPaper00055482:pmt-2(RNAi)_downregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00197592
• Start: 11606129
• End: 11606277
• Strand: -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 149

1 Sequence Ontology Term