WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C09D4.4b.1 Sequence Name  C09D4.4b.1
Length (nt)  3165   Chromosome Location  I: 5479543-5484660
Chromosome . Primary Identifier  I Chromosome Location . Start  5479543
Chromosome Location . End  5484660 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C09D4.4b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00015635 C09D4.4 C09D4.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C09D4.4b C09D4.4b 2748   I: 5479943-5480019

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C09D4.4b.1 5479543 5484660 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

20 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon12898   477   I: 5479543-5480019 Caenorhabditis elegans
Exon12900   122   I: 5480219-5480340 Caenorhabditis elegans
Exon12903   88   I: 5480720-5480807 Caenorhabditis elegans
Exon12906   134   I: 5480855-5480988 Caenorhabditis elegans
Exon12909   177   I: 5481043-5481219 Caenorhabditis elegans
Exon12912   238   I: 5481612-5481849 Caenorhabditis elegans
Exon12915   128   I: 5481893-5482020 Caenorhabditis elegans
Exon12918   191   I: 5482067-5482257 Caenorhabditis elegans
Exon12921   107   I: 5482313-5482419 Caenorhabditis elegans
Exon12925   190   I: 5482466-5482655 Caenorhabditis elegans
Exon12927   150   I: 5482697-5482846 Caenorhabditis elegans
Exon12930   73   I: 5482933-5483005 Caenorhabditis elegans
Exon12933   217   I: 5483058-5483274 Caenorhabditis elegans
Exon12936   156   I: 5483356-5483511 Caenorhabditis elegans
Exon12939   133   I: 5483559-5483691 Caenorhabditis elegans
Exon12942   211   I: 5483900-5484110 Caenorhabditis elegans
Exon12945   85   I: 5484160-5484244 Caenorhabditis elegans
Exon12948   101   I: 5484287-5484387 Caenorhabditis elegans
Exon12951   80   I: 5484434-5484513 Caenorhabditis elegans
Exon12953   107   I: 5484554-5484660 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C09D4.4b.1 5479543 5484660 -1

1 Sequence

Length
3165

1 Sequence Ontology Term

Identifier Name Description
transcript