WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00198959 Gene Name  C40H5.13
Sequence Name  ? C40H5.13 Organism  Caenorhabditis elegans
Automated Description  Enriched in LUAL and neurons based on RNA-seq and single-cell RNA-seq studies. Biotype  SO:0001263
Genetic Position  :± Length (nt)  ? 102
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00198959

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:C40H5.13 C40H5.13 102   X: 11757819-11757920
 

Other

0 CDSs

0 RNAi Result

7 Allele

Public Name
gk964260
gk964029
gk962707
gk964028
gk963810
WBVar01620878
gk294878

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00198959 11757819 11757920 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrX_11757921..11759058   1138 X: 11757921-11759058 Caenorhabditis elegans

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Neuronally enriched transcripts according to a comparison of neuronal nuclei IP samples to total nuclei using isolation of nuclei from tagged specific cell types (INTACT) technology. DESEQ2, fold change > 2 and FDR < 0.01. WBPaper00062103:neuron_enriched
  Single-cell RNA-Seq cell group 108_0 expressed in neuron. scVI 0.6.0 WBPaper00065841:108_0

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00198959 11757819 11757920 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
102

1 Sequence Ontology Term