WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:M01A10.2a Sequence Name  M01A10.2a
Length (nt)  3375   Chromosome Location  I: 5546227-5546246
Chromosome . Primary Identifier  I Chromosome Location . Start  5546227
Chromosome Location . End  5546246
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
M01A10.2a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE40307 TOM-1, isoform a 123.7 1124 Caenorhabditis elegans
 

Other

3 RNAi

WormBase ID
WBRNAi00034331
WBRNAi00050711
WBRNAi00003989

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:M01A10.2a 5546227 5546246 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006594 tom-1 M01A10.2 Caenorhabditis elegans

23 Locations


Feature . Primary Identifier
Start End Strand
CDS:M01A10.2a 5546227 5546246 1
CDS:M01A10.2a 5546300 5546396 1
CDS:M01A10.2a 5546476 5546715 1
CDS:M01A10.2a 5548095 5548193 1
CDS:M01A10.2a 5548245 5548321 1
CDS:M01A10.2a 5548378 5548843 1
CDS:M01A10.2a 5548889 5549125 1
CDS:M01A10.2a 5550822 5550889 1
CDS:M01A10.2a 5550937 5551093 1
CDS:M01A10.2a 5551213 5551407 1
CDS:M01A10.2a 5551940 5552050 1
CDS:M01A10.2a 5552098 5552194 1
CDS:M01A10.2a 5552599 5552741 1
CDS:M01A10.2a 5554741 5554864 1
CDS:M01A10.2a 5555026 5555178 1
CDS:M01A10.2a 5557669 5557782 1
CDS:M01A10.2a 5559329 5559474 1
CDS:M01A10.2a 5559768 5560075 1
CDS:M01A10.2a 5560310 5560373 1
CDS:M01A10.2a 5560525 5560638 1
CDS:M01A10.2a 5560827 5560887 1
CDS:M01A10.2a 5560934 5561079 1
CDS:M01A10.2a 5561165 5561302 1

1 Sequence

Length
3375

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:M01A10.2a.1 M01A10.2a.1 3823   I: 5546120-5561643