WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C40H5.5a.1 Sequence Name  C40H5.5a.1
Length (nt)  1441   Chromosome Location  X: 11764456-11769378
Chromosome . Primary Identifier  X Chromosome Location . Start  11764456
Chromosome Location . End  11769378 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C40H5.5a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006654 ttx-3 C40H5.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C40H5.5a C40H5.5a 1230   X: 11764667-11764774

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C40H5.5a.1 11764456 11769378 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon254064   319   X: 11764456-11764774 Caenorhabditis elegans
Exon254066   111   X: 11764843-11764953 Caenorhabditis elegans
Exon254068   179   X: 11765004-11765182 Caenorhabditis elegans
Exon254070   162   X: 11766556-11766717 Caenorhabditis elegans
Exon254072   70   X: 11766799-11766868 Caenorhabditis elegans
Exon254074   106   X: 11766926-11767031 Caenorhabditis elegans
Exon254076   71   X: 11767339-11767409 Caenorhabditis elegans
Exon254078   101   X: 11767463-11767563 Caenorhabditis elegans
Exon254081   251   X: 11767807-11768057 Caenorhabditis elegans
Exon254082   71   X: 11769308-11769378 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C40H5.5a.1 11764456 11769378 -1

1 Sequence

Length
1441

1 Sequence Ontology Term

Identifier Name Description
transcript