WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F54F7.5.1 Sequence Name  F54F7.5.1
Length (nt)  3403   Chromosome Location  X: 11857478-11862373
Chromosome . Primary Identifier  X Chromosome Location . Start  11857478
Chromosome Location . End  11862373 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F54F7.5.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003219 mes-1 F54F7.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F54F7.5 F54F7.5 2901   X: 11857501-11857620

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F54F7.5.1 11857478 11862373 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon254482   143   X: 11857478-11857620 Caenorhabditis elegans
Exon254483   84   X: 11857679-11857762 Caenorhabditis elegans
Exon254484   100   X: 11857817-11857916 Caenorhabditis elegans
Exon254485   224   X: 11857971-11858194 Caenorhabditis elegans
Exon254486   318   X: 11858409-11858726 Caenorhabditis elegans
Exon254487   163   X: 11858795-11858957 Caenorhabditis elegans
Exon254488   332   X: 11859005-11859336 Caenorhabditis elegans
Exon254489   306   X: 11859981-11860286 Caenorhabditis elegans
Exon254490   183   X: 11860339-11860521 Caenorhabditis elegans
Exon254491   241   X: 11860569-11860809 Caenorhabditis elegans
Exon254492   703   X: 11860888-11861590 Caenorhabditis elegans
Exon254493   606   X: 11861768-11862373 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F54F7.5.1 11857478 11862373 1

1 Sequence

Length
3403

1 Sequence Ontology Term

Identifier Name Description
transcript