WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C49F5.2.1 Sequence Name  C49F5.2.1
Length (nt)  2360   Chromosome Location  X: 11970077-11974679
Chromosome . Primary Identifier  X Chromosome Location . Start  11970077
Chromosome Location . End  11974679 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C49F5.2.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00008206 set-6 C49F5.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C49F5.2 C49F5.2 2127   X: 11970307-11970534

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C49F5.2.1 11970077 11974679 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon254662   458   X: 11970077-11970534 Caenorhabditis elegans
Exon254663   120   X: 11970601-11970720 Caenorhabditis elegans
Exon254664   552   X: 11971255-11971806 Caenorhabditis elegans
Exon254665   132   X: 11971859-11971990 Caenorhabditis elegans
Exon254666   253   X: 11972521-11972773 Caenorhabditis elegans
Exon254667   308   X: 11972821-11973128 Caenorhabditis elegans
Exon254668   105   X: 11973274-11973378 Caenorhabditis elegans
Exon254669   102   X: 11973493-11973594 Caenorhabditis elegans
Exon254670   96   X: 11974170-11974265 Caenorhabditis elegans
Exon254671   144   X: 11974364-11974507 Caenorhabditis elegans
Exon254672   90   X: 11974590-11974679 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C49F5.2.1 11970077 11974679 -1

1 Sequence

Length
2360

1 Sequence Ontology Term

Identifier Name Description
transcript