WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F56H1.5.1 Sequence Name  F56H1.5.1
Length (nt)  3356   Chromosome Location  I: 5754312-5760799
Chromosome . Primary Identifier  I Chromosome Location . Start  5754312
Chromosome Location . End  5760799 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F56H1.5.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018995 ccpp-1 F56H1.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F56H1.5 F56H1.5 3048   I: 5754599-5754835

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F56H1.5.1 5754312 5760799 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon13917   524   I: 5754312-5754835 Caenorhabditis elegans
Exon13918   183   I: 5754889-5755071 Caenorhabditis elegans
Exon13919   218   I: 5755121-5755338 Caenorhabditis elegans
Exon13920   112   I: 5755387-5755498 Caenorhabditis elegans
Exon13921   93   I: 5755547-5755639 Caenorhabditis elegans
Exon13922   97   I: 5755695-5755791 Caenorhabditis elegans
Exon13923   218   I: 5755868-5756085 Caenorhabditis elegans
Exon13924   81   I: 5756134-5756214 Caenorhabditis elegans
Exon13925   306   I: 5756542-5756847 Caenorhabditis elegans
Exon13926   438   I: 5756921-5757358 Caenorhabditis elegans
Exon13927   110   I: 5759079-5759188 Caenorhabditis elegans
Exon13928   204   I: 5759242-5759445 Caenorhabditis elegans
Exon13929   147   I: 5759731-5759877 Caenorhabditis elegans
Exon13930   123   I: 5759929-5760051 Caenorhabditis elegans
Exon13931   244   I: 5760105-5760348 Caenorhabditis elegans
Exon13932   115   I: 5760395-5760509 Caenorhabditis elegans
Exon13933   78   I: 5760606-5760683 Caenorhabditis elegans
Exon13934   65   I: 5760735-5760799 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F56H1.5.1 5754312 5760799 -1

1 Sequence

Length
3356

1 Sequence Ontology Term

Identifier Name Description
transcript