WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:W06B3.2e.1 Sequence Name  W06B3.2e.1
Length (nt)  1566   Chromosome Location  X: 11998022-12005004
Chromosome . Primary Identifier  X Chromosome Location . Start  11998022
Chromosome Location . End  12005004 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
W06B3.2e.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004859 sma-5 W06B3.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:W06B3.2e W06B3.2e 1566   X: 11998022-11998091

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:W06B3.2e.1 11998022 12005004 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon254729   70   X: 11998022-11998091 Caenorhabditis elegans
Exon254733   97   X: 11998311-11998407 Caenorhabditis elegans
Exon254739   118   X: 11998500-11998617 Caenorhabditis elegans
Exon254746   156   X: 11998752-11998907 Caenorhabditis elegans
Exon254753   465   X: 11998956-11999420 Caenorhabditis elegans
Exon254760   110   X: 11999971-12000080 Caenorhabditis elegans
Exon254767   160   X: 12000241-12000400 Caenorhabditis elegans
Exon254774   179   X: 12000454-12000632 Caenorhabditis elegans
Exon254779   184   X: 12001204-12001387 Caenorhabditis elegans
Exon254782   27   X: 12004978-12005004 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:W06B3.2e.1 11998022 12005004 -1

1 Sequence

Length
1566

1 Sequence Ontology Term

Identifier Name Description
transcript