WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:B0198.3a.1 Sequence Name  B0198.3a.1
Length (nt)  3531   Chromosome Location  X: 12042546-12057073
Chromosome . Primary Identifier  X Chromosome Location . Start  12042546
Chromosome Location . End  12057073 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
B0198.3a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00007116 B0198.3 B0198.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:B0198.3a B0198.3a 3042   X: 12042959-12043133

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:B0198.3a.1 12042546 12057073 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon254815   588   X: 12042546-12043133 Caenorhabditis elegans
Exon254819   745   X: 12043188-12043932 Caenorhabditis elegans
Exon254821   223   X: 12043985-12044207 Caenorhabditis elegans
Exon254823   210   X: 12044282-12044491 Caenorhabditis elegans
Exon254825   60   X: 12044547-12044606 Caenorhabditis elegans
Exon254827   303   X: 12044688-12044990 Caenorhabditis elegans
Exon254829   236   X: 12045040-12045275 Caenorhabditis elegans
Exon254831   84   X: 12045325-12045408 Caenorhabditis elegans
Exon254833   163   X: 12045646-12045808 Caenorhabditis elegans
Exon254835   321   X: 12046181-12046501 Caenorhabditis elegans
Exon254837   227   X: 12047363-12047589 Caenorhabditis elegans
Exon254839   100   X: 12048641-12048740 Caenorhabditis elegans
Exon254841   84   X: 12048868-12048951 Caenorhabditis elegans
Exon254843   128   X: 12049218-12049345 Caenorhabditis elegans
Exon254850   59   X: 12057015-12057073 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:B0198.3a.1 12042546 12057073 -1

1 Sequence

Length
3531

1 Sequence Ontology Term

Identifier Name Description
transcript