WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:B0198.3a.2 Sequence Name  B0198.3a.2
Length (nt)  3474   Chromosome Location  X: 12042550-12049351
Chromosome . Primary Identifier  X Chromosome Location . Start  12042550
Chromosome Location . End  12049351 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
B0198.3a.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00007116 B0198.3 B0198.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:B0198.3a B0198.3a 3042   X: 12042959-12043133

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:B0198.3a.2 12042550 12049351 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon254816   584   X: 12042550-12043133 Caenorhabditis elegans
Exon254820   745   X: 12043188-12043932 Caenorhabditis elegans
Exon254822   223   X: 12043985-12044207 Caenorhabditis elegans
Exon254824   210   X: 12044282-12044491 Caenorhabditis elegans
Exon254826   60   X: 12044547-12044606 Caenorhabditis elegans
Exon254828   303   X: 12044688-12044990 Caenorhabditis elegans
Exon254830   236   X: 12045040-12045275 Caenorhabditis elegans
Exon254832   84   X: 12045325-12045408 Caenorhabditis elegans
Exon254834   163   X: 12045646-12045808 Caenorhabditis elegans
Exon254836   321   X: 12046181-12046501 Caenorhabditis elegans
Exon254838   227   X: 12047363-12047589 Caenorhabditis elegans
Exon254840   100   X: 12048641-12048740 Caenorhabditis elegans
Exon254842   84   X: 12048868-12048951 Caenorhabditis elegans
Exon254844   134   X: 12049218-12049351 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:B0198.3a.2 12042550 12049351 -1

1 Sequence

Length
3474

1 Sequence Ontology Term

Identifier Name Description
transcript