WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00198946 Gene Name  C34G6.9
Sequence Name  ? C34G6.9 Organism  Caenorhabditis elegans
Automated Description  Is affected by cep-1; set-26; and dlc-1 based on RNA-seq studies. Biotype  SO:0001263
Genetic Position  Length (nt)  ? 353
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00198946

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:C34G6.9 C34G6.9 353   I: 5879139-5879491
 

Other

0 CDSs

0 RNAi Result

8 Allele

Public Name
gk962858
gk962706
gk963902
gk964505
gk111967
gk912161
gk892167
gk111966

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00198946 5879139 5879491 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

0 Downstream Intergenic Region

3 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that interact with 3xFLAG-DLC-1 as identified by immunoprecipitation followed by RNA sequencing. DESeq2, fold change > 2,, p-value < 0.01 WBPaper00055334:DLC-1_interacting
  ncRNAs with significantly decreased expression in cep-1(gk138) than in N2 under normal conditions, according to RNAseq. ncRNAs with more than 2 fold difference in expression are considered differentially expressed WBPaper00045380:cep-1(gk138)_downregulated_normal
  Transcripts that showed significantly decreased expression in set-26(tm2467) animals comparing to in N2. edgeR, 5% FDR. WBPaper00054410:set-26(tm2467)_downregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00198946 5879139 5879491 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
353

1 Sequence Ontology Term