WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F17E5.1a.1 Sequence Name  F17E5.1a.1
Length (nt)  3373   Chromosome Location  X: 12399517-12414041
Chromosome . Primary Identifier  X Chromosome Location . Start  12399517
Chromosome Location . End  12414041 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F17E5.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002991 lin-2 F17E5.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F17E5.1a F17E5.1a 2886   X: 12399988-12400167

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F17E5.1a.1 12399517 12414041 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

24 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon255503   651   X: 12399517-12400167 Caenorhabditis elegans
Exon255505   161   X: 12400875-12401035 Caenorhabditis elegans
Exon255507   123   X: 12401083-12401205 Caenorhabditis elegans
Exon255509   127   X: 12401263-12401389 Caenorhabditis elegans
Exon255511   104   X: 12401434-12401537 Caenorhabditis elegans
Exon255513   108   X: 12401587-12401694 Caenorhabditis elegans
Exon255515   79   X: 12401816-12401894 Caenorhabditis elegans
Exon255517   254   X: 12401952-12402205 Caenorhabditis elegans
Exon255519   162   X: 12402301-12402462 Caenorhabditis elegans
Exon255521   115   X: 12402611-12402725 Caenorhabditis elegans
Exon255523   87   X: 12402774-12402860 Caenorhabditis elegans
Exon255525   84   X: 12404276-12404359 Caenorhabditis elegans
Exon255527   75   X: 12405250-12405324 Caenorhabditis elegans
Exon255532   114   X: 12407844-12407957 Caenorhabditis elegans
Exon255533   86   X: 12409093-12409178 Caenorhabditis elegans
Exon255534   97   X: 12409280-12409376 Caenorhabditis elegans
Exon255535   108   X: 12409991-12410098 Caenorhabditis elegans
Exon255536   96   X: 12410492-12410587 Caenorhabditis elegans
Exon255537   176   X: 12411063-12411238 Caenorhabditis elegans
Exon255538   83   X: 12411287-12411369 Caenorhabditis elegans
Exon255539   96   X: 12411417-12411512 Caenorhabditis elegans
Exon255540   184   X: 12412802-12412985 Caenorhabditis elegans
Exon255541   113   X: 12413788-12413900 Caenorhabditis elegans
Exon255542   90   X: 12413952-12414041 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F17E5.1a.1 12399517 12414041 -1

1 Sequence

Length
3373

1 Sequence Ontology Term

Identifier Name Description
transcript