WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:H20J18.1a.3 Sequence Name  H20J18.1a.3
Length (nt)  4030   Chromosome Location  X: 12503887-12525772
Chromosome . Primary Identifier  X Chromosome Location . Start  12503887
Chromosome Location . End  12525772 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
H20J18.1a.3

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004739 scd-1 H20J18.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:H20J18.1a H20J18.1a 2844   X: 12504620-12504733

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:H20J18.1a.3 12503887 12525772 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon255649   847   X: 12503887-12504733 Caenorhabditis elegans
Exon255659   74   X: 12505015-12505088 Caenorhabditis elegans
Exon255673   166   X: 12505146-12505311 Caenorhabditis elegans
Exon255683   108   X: 12505607-12505714 Caenorhabditis elegans
Exon255692   91   X: 12505819-12505909 Caenorhabditis elegans
Exon255705   263   X: 12506151-12506413 Caenorhabditis elegans
Exon255717   135   X: 12506643-12506777 Caenorhabditis elegans
Exon255732   134   X: 12506881-12507014 Caenorhabditis elegans
Exon255740   776   X: 12507071-12507846 Caenorhabditis elegans
Exon255752   923   X: 12507894-12508816 Caenorhabditis elegans
Exon255766   62   X: 12509158-12509219 Caenorhabditis elegans
Exon255776   96   X: 12513953-12514048 Caenorhabditis elegans
Exon255783   355   X: 12525418-12525772 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:H20J18.1a.3 12503887 12525772 -1

1 Sequence

Length
4030

1 Sequence Ontology Term

Identifier Name Description
transcript