WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:H20J18.1c.1 Sequence Name  H20J18.1c.1
Length (nt)  3246   Chromosome Location  X: 12504620-12525721
Chromosome . Primary Identifier  X Chromosome Location . Start  12504620
Chromosome Location . End  12525721 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
H20J18.1c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004739 scd-1 H20J18.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:H20J18.1c H20J18.1c 3246   X: 12504620-12504733

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:H20J18.1c.1 12504620 12525721 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon255656   114   X: 12504620-12504733 Caenorhabditis elegans
Exon255661   74   X: 12505015-12505088 Caenorhabditis elegans
Exon255675   166   X: 12505146-12505311 Caenorhabditis elegans
Exon255685   108   X: 12505607-12505714 Caenorhabditis elegans
Exon255694   91   X: 12505819-12505909 Caenorhabditis elegans
Exon255707   263   X: 12506151-12506413 Caenorhabditis elegans
Exon255718   135   X: 12506643-12506777 Caenorhabditis elegans
Exon255734   134   X: 12506881-12507014 Caenorhabditis elegans
Exon255742   776   X: 12507071-12507846 Caenorhabditis elegans
Exon255754   923   X: 12507894-12508816 Caenorhabditis elegans
Exon255767   62   X: 12509158-12509219 Caenorhabditis elegans
Exon255777   96   X: 12513953-12514048 Caenorhabditis elegans
Exon255782   304   X: 12525418-12525721 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:H20J18.1c.1 12504620 12525721 -1

1 Sequence

Length
3246

1 Sequence Ontology Term

Identifier Name Description
transcript