WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T27A3.2b.1 Sequence Name  T27A3.2b.1
Length (nt)  2599   Chromosome Location  I: 6110134-6114540
Chromosome . Primary Identifier  I Chromosome Location . Start  6110134
Chromosome Location . End  6114540 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T27A3.2b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00020839 usp-5 T27A3.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T27A3.2b T27A3.2b 2376   I: 6110139-6110259

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T27A3.2b.1 6110134 6114540 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon15057   126   I: 6110134-6110259 Caenorhabditis elegans
Exon15059   110   I: 6110317-6110426 Caenorhabditis elegans
Exon15061   74   I: 6110470-6110543 Caenorhabditis elegans
Exon15063   90   I: 6110587-6110676 Caenorhabditis elegans
Exon15065   303   I: 6110722-6111024 Caenorhabditis elegans
Exon15067   298   I: 6111122-6111419 Caenorhabditis elegans
Exon15069   272   I: 6111489-6111760 Caenorhabditis elegans
Exon15071   160   I: 6112342-6112501 Caenorhabditis elegans
Exon15072   99   I: 6112545-6112643 Caenorhabditis elegans
Exon15075   93   I: 6112701-6112793 Caenorhabditis elegans
Exon15077   261   I: 6112948-6113208 Caenorhabditis elegans
Exon15079   219   I: 6113252-6113470 Caenorhabditis elegans
Exon15081   189   I: 6113645-6113833 Caenorhabditis elegans
Exon15082   305   I: 6114236-6114540 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T27A3.2b.1 6110134 6114540 1

1 Sequence

Length
2599

1 Sequence Ontology Term

Identifier Name Description
transcript