WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:R09A8.2.1 Sequence Name  R09A8.2.1
Length (nt)  3111   Chromosome Location  X: 12619465-12623678
Chromosome . Primary Identifier  X Chromosome Location . Start  12619465
Chromosome Location . End  12623678 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R09A8.2.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00011153 R09A8.2 R09A8.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R09A8.2 R09A8.2 2730   X: 12619472-12620060

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:R09A8.2.1 12619465 12623678 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon255910   596   X: 12619465-12620060 Caenorhabditis elegans
Exon255911   383   X: 12620110-12620492 Caenorhabditis elegans
Exon255912   159   X: 12620544-12620702 Caenorhabditis elegans
Exon255913   174   X: 12620800-12620973 Caenorhabditis elegans
Exon255914   180   X: 12621019-12621198 Caenorhabditis elegans
Exon255915   270   X: 12621260-12621529 Caenorhabditis elegans
Exon255916   180   X: 12621580-12621759 Caenorhabditis elegans
Exon255917   309   X: 12621959-12622267 Caenorhabditis elegans
Exon255918   99   X: 12622371-12622469 Caenorhabditis elegans
Exon255919   244   X: 12622516-12622759 Caenorhabditis elegans
Exon255920   517   X: 12623162-12623678 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:R09A8.2.1 12619465 12623678 1

1 Sequence

Length
3111

1 Sequence Ontology Term

Identifier Name Description
transcript