WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T08B2.5d.1 Sequence Name  T08B2.5d.1
Length (nt)  3269   Chromosome Location  I: 6215727-6219852
Chromosome . Primary Identifier  I Chromosome Location . Start  6215727
Chromosome Location . End  6219852 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T08B2.5d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00020346 rbm-5 T08B2.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T08B2.5d T08B2.5d 492   I: 6215791-6215847

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T08B2.5d.1 6215727 6219852 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon15371   121   I: 6215727-6215847 Caenorhabditis elegans
Exon15380   69   I: 6215919-6215987 Caenorhabditis elegans
Exon15387   107   I: 6216062-6216168 Caenorhabditis elegans
Exon15398   896   I: 6216359-6217254 Caenorhabditis elegans
Exon15407   150   I: 6217303-6217452 Caenorhabditis elegans
Exon15414   105   I: 6217500-6217604 Caenorhabditis elegans
Exon15421   118   I: 6217651-6217768 Caenorhabditis elegans
Exon15428   207   I: 6217818-6218024 Caenorhabditis elegans
Exon15435   117   I: 6218068-6218184 Caenorhabditis elegans
Exon15441   80   I: 6218230-6218309 Caenorhabditis elegans
Exon15448   163   I: 6218353-6218515 Caenorhabditis elegans
Exon15455   363   I: 6218564-6218926 Caenorhabditis elegans
Exon15462   281   I: 6218976-6219256 Caenorhabditis elegans
Exon15469   334   I: 6219316-6219649 Caenorhabditis elegans
Exon15474   158   I: 6219695-6219852 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T08B2.5d.1 6215727 6219852 1

1 Sequence

Length
3269

1 Sequence Ontology Term

Identifier Name Description
transcript